Cluster: HRGMv2_4536_CGC48
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_83 | HRGMv2_4536_83_38 | 41301 | 43052 | + | GH2 |
| pfam | HRGMv2_4536_83 | HRGMv2_4536_83_39 | 43036 | 45006 | + | FBPase_2 |
| pfam | HRGMv2_4536_83 | HRGMv2_4536_83_40 | 45052 | 45480 | + | HTH_31 |
| TC | HRGMv2_4536_83 | HRGMv2_4536_83_41 | 45483 | 46580 | + | 9.B.106.2.2 |
| NULL(UNKNOWN) | HRGMv2_4536_83 | HRGMv2_4536_83_42 | 46714 | 47649 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4536_83 | HRGMv2_4536_83_43 | 47663 | 48004 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4536_83 | HRGMv2_4536_83_44 | 48062 | 48787 | - | 3.A.1.132.6 |
Gene ID: HRGMv2_4536_83_38
Type: CAZyme
Location: 41301 - 43052 (+)
Type: CAZyme
Location: 41301 - 43052 (+)
Gene ID: HRGMv2_4536_83_39
Type: pfam
Location: 43036 - 45006 (+)
Type: pfam
Location: 43036 - 45006 (+)
Gene ID: HRGMv2_4536_83_40
Type: pfam
Location: 45052 - 45480 (+)
Type: pfam
Location: 45052 - 45480 (+)
Gene ID: HRGMv2_4536_83_41
Type: TC
Location: 45483 - 46580 (+)
Type: TC
Location: 45483 - 46580 (+)
Gene ID: HRGMv2_4536_83_42
Type:
Location: 46714 - 47649 (+)
Type:
Location: 46714 - 47649 (+)
Gene ID: HRGMv2_4536_83_43
Type:
Location: 47663 - 48004 (+)
Type:
Location: 47663 - 48004 (+)
Gene ID: HRGMv2_4536_83_44
Type: TC
Location: 48062 - 48787 (-)
Type: TC
Location: 48062 - 48787 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.