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Cluster: HRGMv2_4536_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4536_83 HRGMv2_4536_83_2 953 3556 - GH3
pfam HRGMv2_4536_83 HRGMv2_4536_83_3 3581 4861 - MFS_1
CAZyme HRGMv2_4536_83 HRGMv2_4536_83_4 4880 6709 - GH20
CAZyme HRGMv2_4536_83 HRGMv2_4536_83_5 6764 9865 - GH38
sulfatase HRGMv2_4536_83 HRGMv2_4536_83_6 9928 10521 - S1_46
CAZyme HRGMv2_4536_83 HRGMv2_4536_83_7 10719 11708 - GH130_2
pfam HRGMv2_4536_83 HRGMv2_4536_83_8 11739 14135 - Glyco_hydro_38N
pfam HRGMv2_4536_83 HRGMv2_4536_83_9 14349 15854 - DUF3502
TC HRGMv2_4536_83 HRGMv2_4536_83_10 15916 16881 - 3.A.1.1.29
TC HRGMv2_4536_83 HRGMv2_4536_83_11 16897 17868 - 3.A.1.1.29
Gene ID: HRGMv2_4536_83_2
Type: CAZyme
Location: 953 - 3556 (-)
Gene ID: HRGMv2_4536_83_3
Type: pfam
Location: 3581 - 4861 (-)
Gene ID: HRGMv2_4536_83_4
Type: CAZyme
Location: 4880 - 6709 (-)
Gene ID: HRGMv2_4536_83_5
Type: CAZyme
Location: 6764 - 9865 (-)
Gene ID: HRGMv2_4536_83_6
Type: sulfatase
Location: 9928 - 10521 (-)
Gene ID: HRGMv2_4536_83_7
Type: CAZyme
Location: 10719 - 11708 (-)
Gene ID: HRGMv2_4536_83_8
Type: pfam
Location: 11739 - 14135 (-)
Gene ID: HRGMv2_4536_83_9
Type: pfam
Location: 14349 - 15854 (-)
Gene ID: HRGMv2_4536_83_10
Type: TC
Location: 15916 - 16881 (-)
Gene ID: HRGMv2_4536_83_11
Type: TC
Location: 16897 - 17868 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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