Cluster: HRGMv2_4536_CGC45
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00157
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_78 | HRGMv2_4536_78_49 | 58343 | 58861 | - | 3.A.1.26.5 |
| TF | HRGMv2_4536_78 | HRGMv2_4536_78_50 | 59307 | 61145 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4536_78 | HRGMv2_4536_78_51 | 61279 | 62580 | - | 2.A.56.1.5 |
| TC | HRGMv2_4536_78 | HRGMv2_4536_78_52 | 62593 | 63081 | - | 2.A.56.1.5 |
| TC | HRGMv2_4536_78 | HRGMv2_4536_78_53 | 63095 | 64114 | - | 2.A.56.1.9 |
| CAZyme | HRGMv2_4536_78 | HRGMv2_4536_78_54 | 64133 | 66634 | - | GH31_2 |
| CAZyme | HRGMv2_4536_78 | HRGMv2_4536_78_55 | 66963 | 67760 | + | CE1 |
Gene ID: HRGMv2_4536_78_49
Type: TC
Location: 58343 - 58861 (-)
Type: TC
Location: 58343 - 58861 (-)
Gene ID: HRGMv2_4536_78_50
Type: TF
Location: 59307 - 61145 (-)
Type: TF
Location: 59307 - 61145 (-)
Gene ID: HRGMv2_4536_78_51
Type: TC
Location: 61279 - 62580 (-)
Type: TC
Location: 61279 - 62580 (-)
Gene ID: HRGMv2_4536_78_52
Type: TC
Location: 62593 - 63081 (-)
Type: TC
Location: 62593 - 63081 (-)
Gene ID: HRGMv2_4536_78_53
Type: TC
Location: 63095 - 64114 (-)
Type: TC
Location: 63095 - 64114 (-)
Gene ID: HRGMv2_4536_78_54
Type: CAZyme
Location: 64133 - 66634 (-)
Type: CAZyme
Location: 64133 - 66634 (-)
Gene ID: HRGMv2_4536_78_55
Type: CAZyme
Location: 66963 - 67760 (+)
Type: CAZyme
Location: 66963 - 67760 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.