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Cluster: HRGMv2_4536_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4536_78 HRGMv2_4536_78_36 43813 45195 + 2.A.66.1.32
TC HRGMv2_4536_78 HRGMv2_4536_78_37 45235 45810 + 2.A.115.2.14
STP HRGMv2_4536_78 HRGMv2_4536_78_38 45995 47377 - PALP
TF HRGMv2_4536_78 HRGMv2_4536_78_39 47839 48717 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_4536_78 HRGMv2_4536_78_40 48835 50475 + GH13_31
TC HRGMv2_4536_78 HRGMv2_4536_78_41 50472 51926 + 4.A.1.2.8
TC HRGMv2_4536_78 HRGMv2_4536_78_42 52172 52822 - 2.A.4.7.2
Gene ID: HRGMv2_4536_78_36
Type: TC
Location: 43813 - 45195 (+)
Gene ID: HRGMv2_4536_78_37
Type: TC
Location: 45235 - 45810 (+)
Gene ID: HRGMv2_4536_78_38
Type: STP
Location: 45995 - 47377 (-)
Gene ID: HRGMv2_4536_78_39
Type: TF
Location: 47839 - 48717 (-)
Gene ID: HRGMv2_4536_78_40
Type: CAZyme
Location: 48835 - 50475 (+)
Gene ID: HRGMv2_4536_78_41
Type: TC
Location: 50472 - 51926 (+)
Gene ID: HRGMv2_4536_78_42
Type: TC
Location: 52172 - 52822 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4536_78_38 vegetarian > vegan 1.36431 0.01287

🧭 Explore Read Mapping of CGC

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