Cluster: HRGMv2_4536_CGC43
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00230
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_78 | HRGMv2_4536_78_18 | 22359 | 22562 | + | 2.A.7.3.59 |
| TC | HRGMv2_4536_78 | HRGMv2_4536_78_19 | 22592 | 23251 | + | 2.A.7.3.59 |
| TF | HRGMv2_4536_78 | HRGMv2_4536_78_20 | 23298 | 24068 | - | HTH_6 |
| CAZyme | HRGMv2_4536_78 | HRGMv2_4536_78_21 | 24271 | 25596 | + | GH4 |
| TC | HRGMv2_4536_78 | HRGMv2_4536_78_22 | 25615 | 27177 | + | 4.A.1.1.3 |
Gene ID: HRGMv2_4536_78_18
Type: TC
Location: 22359 - 22562 (+)
Type: TC
Location: 22359 - 22562 (+)
Gene ID: HRGMv2_4536_78_19
Type: TC
Location: 22592 - 23251 (+)
Type: TC
Location: 22592 - 23251 (+)
Gene ID: HRGMv2_4536_78_20
Type: TF
Location: 23298 - 24068 (-)
Type: TF
Location: 23298 - 24068 (-)
Gene ID: HRGMv2_4536_78_21
Type: CAZyme
Location: 24271 - 25596 (+)
Type: CAZyme
Location: 24271 - 25596 (+)
Gene ID: HRGMv2_4536_78_22
Type: TC
Location: 25615 - 27177 (+)
Type: TC
Location: 25615 - 27177 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.