Cluster: HRGMv2_4536_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_06285
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_18 | HRGMv2_4536_18_54 | 37806 | 39581 | - | GH13_9 |
| TC | HRGMv2_4536_18 | HRGMv2_4536_18_55 | 39702 | 41063 | - | 1.A.26.1.2 |
| pfam | HRGMv2_4536_18 | HRGMv2_4536_18_56 | 41422 | 42003 | - | Proteasome |
| TC | HRGMv2_4536_18 | HRGMv2_4536_18_57 | 42111 | 42623 | - | 4.A.1.2.6 |
Gene ID: HRGMv2_4536_18_54
Type: CAZyme
Location: 37806 - 39581 (-)
Type: CAZyme
Location: 37806 - 39581 (-)
Gene ID: HRGMv2_4536_18_55
Type: TC
Location: 39702 - 41063 (-)
Type: TC
Location: 39702 - 41063 (-)
Gene ID: HRGMv2_4536_18_56
Type: pfam
Location: 41422 - 42003 (-)
Type: pfam
Location: 41422 - 42003 (-)
Gene ID: HRGMv2_4536_18_57
Type: TC
Location: 42111 - 42623 (-)
Type: TC
Location: 42111 - 42623 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.