Cluster: HRGMv2_4536_CGC39
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_04433
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_75 | HRGMv2_4536_75_7 | 6269 | 7147 | + | 3.A.1.103.5 |
| TC | HRGMv2_4536_75 | HRGMv2_4536_75_8 | 7160 | 8443 | + | 3.A.1.103.5 |
| CAZyme | HRGMv2_4536_75 | HRGMv2_4536_75_9 | 8440 | 9417 | + | GT100 |
Gene ID: HRGMv2_4536_75_7
Type: TC
Location: 6269 - 7147 (+)
Type: TC
Location: 6269 - 7147 (+)
Gene ID: HRGMv2_4536_75_8
Type: TC
Location: 7160 - 8443 (+)
Type: TC
Location: 7160 - 8443 (+)
Gene ID: HRGMv2_4536_75_9
Type: CAZyme
Location: 8440 - 9417 (+)
Type: CAZyme
Location: 8440 - 9417 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4536_75_9 | vegetarian > omnivore | 1.25178 | 0.01878 |