Cluster: HRGMv2_4536_CGC35
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00027
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_65 | HRGMv2_4536_65_23 | 29325 | 30722 | + | GH1 |
| TC | HRGMv2_4536_65 | HRGMv2_4536_65_24 | 30738 | 32153 | + | 4.A.1.2.11 |
| TF | HRGMv2_4536_65 | HRGMv2_4536_65_25 | 32255 | 33067 | + | HTH_6 |
| CAZyme | HRGMv2_4536_65 | HRGMv2_4536_65_26 | 33237 | 34589 | + | GH1 |
Gene ID: HRGMv2_4536_65_23
Type: CAZyme
Location: 29325 - 30722 (+)
Type: CAZyme
Location: 29325 - 30722 (+)
Gene ID: HRGMv2_4536_65_24
Type: TC
Location: 30738 - 32153 (+)
Type: TC
Location: 30738 - 32153 (+)
Gene ID: HRGMv2_4536_65_25
Type: TF
Location: 32255 - 33067 (+)
Type: TF
Location: 32255 - 33067 (+)
Gene ID: HRGMv2_4536_65_26
Type: CAZyme
Location: 33237 - 34589 (+)
Type: CAZyme
Location: 33237 - 34589 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.