Cluster: HRGMv2_4536_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_64 | HRGMv2_4536_64_21 | 18813 | 19613 | + | 3.A.1.103.6 |
| TC | HRGMv2_4536_64 | HRGMv2_4536_64_22 | 19626 | 20402 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_4536_64 | HRGMv2_4536_64_23 | 20411 | 22282 | + | GT2 | GT2 |
| pfam | HRGMv2_4536_64 | HRGMv2_4536_64_24 | 22296 | 22544 | + | FakA-like_M |
| CAZyme | HRGMv2_4536_64 | HRGMv2_4536_64_25 | 22549 | 24387 | + | GT2 | GT2 |
Gene ID: HRGMv2_4536_64_21
Type: TC
Location: 18813 - 19613 (+)
Type: TC
Location: 18813 - 19613 (+)
Gene ID: HRGMv2_4536_64_22
Type: TC
Location: 19626 - 20402 (+)
Type: TC
Location: 19626 - 20402 (+)
Gene ID: HRGMv2_4536_64_23
Type: CAZyme
Location: 20411 - 22282 (+)
Type: CAZyme
Location: 20411 - 22282 (+)
Gene ID: HRGMv2_4536_64_24
Type: pfam
Location: 22296 - 22544 (+)
Type: pfam
Location: 22296 - 22544 (+)
Gene ID: HRGMv2_4536_64_25
Type: CAZyme
Location: 22549 - 24387 (+)
Type: CAZyme
Location: 22549 - 24387 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.