Cluster: HRGMv2_4536_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_04900
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_57 | HRGMv2_4536_57_6 | 5609 | 6949 | - | GH140 |
| TC | HRGMv2_4536_57 | HRGMv2_4536_57_7 | 7038 | 8414 | - | 4.A.1.2.2 |
| TF | HRGMv2_4536_57 | HRGMv2_4536_57_8 | 8647 | 9675 | + | LacI |
| CAZyme | HRGMv2_4536_57 | HRGMv2_4536_57_9 | 9729 | 11171 | + | GH1 |
Gene ID: HRGMv2_4536_57_6
Type: CAZyme
Location: 5609 - 6949 (-)
Type: CAZyme
Location: 5609 - 6949 (-)
Gene ID: HRGMv2_4536_57_7
Type: TC
Location: 7038 - 8414 (-)
Type: TC
Location: 7038 - 8414 (-)
Gene ID: HRGMv2_4536_57_8
Type: TF
Location: 8647 - 9675 (+)
Type: TF
Location: 8647 - 9675 (+)
Gene ID: HRGMv2_4536_57_9
Type: CAZyme
Location: 9729 - 11171 (+)
Type: CAZyme
Location: 9729 - 11171 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.