Cluster: HRGMv2_4536_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_02254
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_55 | HRGMv2_4536_55_28 | 29934 | 30659 | + | 3.A.1.125.2 |
| TC | HRGMv2_4536_55 | HRGMv2_4536_55_29 | 30661 | 34737 | + | 3.A.1.137.2 |
| NULL(UNKNOWN) | HRGMv2_4536_55 | HRGMv2_4536_55_30 | 34844 | 34933 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4536_55 | HRGMv2_4536_55_31 | 34955 | 35455 | + | MarR |
| TC | HRGMv2_4536_55 | HRGMv2_4536_55_32 | 35530 | 37287 | + | 3.A.1.135.5 |
| TC | HRGMv2_4536_55 | HRGMv2_4536_55_33 | 37287 | 39212 | + | 3.A.1.135.5 |
| CAZyme | HRGMv2_4536_55 | HRGMv2_4536_55_34 | 39433 | 40251 | + | CBM13 |
Gene ID: HRGMv2_4536_55_28
Type: TC
Location: 29934 - 30659 (+)
Type: TC
Location: 29934 - 30659 (+)
Gene ID: HRGMv2_4536_55_29
Type: TC
Location: 30661 - 34737 (+)
Type: TC
Location: 30661 - 34737 (+)
Gene ID: HRGMv2_4536_55_30
Type:
Location: 34844 - 34933 (+)
Type:
Location: 34844 - 34933 (+)
Gene ID: HRGMv2_4536_55_31
Type: TF
Location: 34955 - 35455 (+)
Type: TF
Location: 34955 - 35455 (+)
Gene ID: HRGMv2_4536_55_32
Type: TC
Location: 35530 - 37287 (+)
Type: TC
Location: 35530 - 37287 (+)
Gene ID: HRGMv2_4536_55_33
Type: TC
Location: 37287 - 39212 (+)
Type: TC
Location: 37287 - 39212 (+)
Gene ID: HRGMv2_4536_55_34
Type: CAZyme
Location: 39433 - 40251 (+)
Type: CAZyme
Location: 39433 - 40251 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.