Cluster: HRGMv2_4536_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_01900
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_5 | HRGMv2_4536_5_99 | 104369 | 106297 | - | GH13_14 |
| TF | HRGMv2_4536_5 | HRGMv2_4536_5_100 | 106480 | 106854 | + | GntR |
| TC | HRGMv2_4536_5 | HRGMv2_4536_5_101 | 106858 | 107745 | + | 3.A.1.105.12 |
Gene ID: HRGMv2_4536_5_99
Type: CAZyme
Location: 104369 - 106297 (-)
Type: CAZyme
Location: 104369 - 106297 (-)
Gene ID: HRGMv2_4536_5_100
Type: TF
Location: 106480 - 106854 (+)
Type: TF
Location: 106480 - 106854 (+)
Gene ID: HRGMv2_4536_5_101
Type: TC
Location: 106858 - 107745 (+)
Type: TC
Location: 106858 - 107745 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.