Cluster: HRGMv2_4536_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_55 | HRGMv2_4536_55_2 | 636 | 2279 | + | 4.A.3.2.2 |
| TC | HRGMv2_4536_55 | HRGMv2_4536_55_3 | 2298 | 2636 | + | 4.A.3.2.8 |
| STP | HRGMv2_4536_55 | HRGMv2_4536_55_4 | 2730 | 3929 | + | Aminotran_1_2 |
| CAZyme | HRGMv2_4536_55 | HRGMv2_4536_55_5 | 3933 | 5408 | + | GH1 |
Gene ID: HRGMv2_4536_55_2
Type: TC
Location: 636 - 2279 (+)
Type: TC
Location: 636 - 2279 (+)
Gene ID: HRGMv2_4536_55_3
Type: TC
Location: 2298 - 2636 (+)
Type: TC
Location: 2298 - 2636 (+)
Gene ID: HRGMv2_4536_55_4
Type: STP
Location: 2730 - 3929 (+)
Type: STP
Location: 2730 - 3929 (+)
Gene ID: HRGMv2_4536_55_5
Type: CAZyme
Location: 3933 - 5408 (+)
Type: CAZyme
Location: 3933 - 5408 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.