Cluster: HRGMv2_4536_CGC27
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00696
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_50 | HRGMv2_4536_50_3 | 1180 | 2085 | + | GH25 |
| pfam | HRGMv2_4536_50 | HRGMv2_4536_50_4 | 2098 | 2577 | + | Phage_holin_4_1 |
| NULL(UNKNOWN) | HRGMv2_4536_50 | HRGMv2_4536_50_5 | 2978 | 4120 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4536_50 | HRGMv2_4536_50_6 | 4271 | 6883 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_4536_50_3
Type: CAZyme
Location: 1180 - 2085 (+)
Type: CAZyme
Location: 1180 - 2085 (+)
Gene ID: HRGMv2_4536_50_4
Type: pfam
Location: 2098 - 2577 (+)
Type: pfam
Location: 2098 - 2577 (+)
Gene ID: HRGMv2_4536_50_5
Type:
Location: 2978 - 4120 (-)
Type:
Location: 2978 - 4120 (-)
Gene ID: HRGMv2_4536_50_6
Type: TC
Location: 4271 - 6883 (-)
Type: TC
Location: 4271 - 6883 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.