Cluster: HRGMv2_4536_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00335
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_47 | HRGMv2_4536_47_42 | 50008 | 52008 | + | GH42 |
| TF | HRGMv2_4536_47 | HRGMv2_4536_47_43 | 52189 | 53196 | + | LacI |
| pfam | HRGMv2_4536_47 | HRGMv2_4536_47_44 | 53502 | 54767 | + | SBP_bac_8 |
| TC | HRGMv2_4536_47 | HRGMv2_4536_47_45 | 54921 | 56372 | + | 3.A.1.1.27 |
| TC | HRGMv2_4536_47 | HRGMv2_4536_47_46 | 56369 | 57262 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_4536_47 | HRGMv2_4536_47_47 | 57425 | 60520 | + | CBM61 | CBM61 | GH53 |
Gene ID: HRGMv2_4536_47_42
Type: CAZyme
Location: 50008 - 52008 (+)
Type: CAZyme
Location: 50008 - 52008 (+)
Gene ID: HRGMv2_4536_47_43
Type: TF
Location: 52189 - 53196 (+)
Type: TF
Location: 52189 - 53196 (+)
Gene ID: HRGMv2_4536_47_44
Type: pfam
Location: 53502 - 54767 (+)
Type: pfam
Location: 53502 - 54767 (+)
Gene ID: HRGMv2_4536_47_45
Type: TC
Location: 54921 - 56372 (+)
Type: TC
Location: 54921 - 56372 (+)
Gene ID: HRGMv2_4536_47_46
Type: TC
Location: 56369 - 57262 (+)
Type: TC
Location: 56369 - 57262 (+)
Gene ID: HRGMv2_4536_47_47
Type: CAZyme
Location: 57425 - 60520 (+)
Type: CAZyme
Location: 57425 - 60520 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.