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Cluster: HRGMv2_4536_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4536_47 HRGMv2_4536_47_2 1582 2589 + 3.A.1.1.20
NULL(UNKNOWN) HRGMv2_4536_47 HRGMv2_4536_47_3 2606 3289 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4536_47 HRGMv2_4536_47_4 3240 3464 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4536_47 HRGMv2_4536_47_5 3543 4562 + GH130_2
pfam HRGMv2_4536_47 HRGMv2_4536_47_6 4579 5226 + Glyco_hydro_76 | GlcNAc_2-epim
pfam HRGMv2_4536_47 HRGMv2_4536_47_7 5195 5758 + GlcNAc_2-epim
CAZyme HRGMv2_4536_47 HRGMv2_4536_47_8 5745 6935 + GH130_1
CAZyme HRGMv2_4536_47 HRGMv2_4536_47_9 6937 8448 + CE20
TC HRGMv2_4536_47 HRGMv2_4536_47_10 8467 9102 + 9.B.28.1.2
CAZyme HRGMv2_4536_47 HRGMv2_4536_47_11 9233 11377 + GH36
CAZyme HRGMv2_4536_47 HRGMv2_4536_47_12 11381 12298 + GH113
TC HRGMv2_4536_47 HRGMv2_4536_47_13 12449 13540 - 2.A.2.3.1
TF HRGMv2_4536_47 HRGMv2_4536_47_14 13704 15041 + HTH_AraC | HTH_AraC
TC HRGMv2_4536_47 HRGMv2_4536_47_15 15243 17117 + 4.A.1.2.11
CAZyme HRGMv2_4536_47 HRGMv2_4536_47_16 17136 18548 + GH1
Gene ID: HRGMv2_4536_47_2
Type: TC
Location: 1582 - 2589 (+)
Gene ID: HRGMv2_4536_47_3
Type:
Location: 2606 - 3289 (+)
Gene ID: HRGMv2_4536_47_4
Type:
Location: 3240 - 3464 (+)
Gene ID: HRGMv2_4536_47_5
Type: CAZyme
Location: 3543 - 4562 (+)
Gene ID: HRGMv2_4536_47_6
Type: pfam
Location: 4579 - 5226 (+)
Gene ID: HRGMv2_4536_47_7
Type: pfam
Location: 5195 - 5758 (+)
Gene ID: HRGMv2_4536_47_8
Type: CAZyme
Location: 5745 - 6935 (+)
Gene ID: HRGMv2_4536_47_9
Type: CAZyme
Location: 6937 - 8448 (+)
Gene ID: HRGMv2_4536_47_10
Type: TC
Location: 8467 - 9102 (+)
Gene ID: HRGMv2_4536_47_11
Type: CAZyme
Location: 9233 - 11377 (+)
Gene ID: HRGMv2_4536_47_12
Type: CAZyme
Location: 11381 - 12298 (+)
Gene ID: HRGMv2_4536_47_13
Type: TC
Location: 12449 - 13540 (-)
Gene ID: HRGMv2_4536_47_14
Type: TF
Location: 13704 - 15041 (+)
Gene ID: HRGMv2_4536_47_15
Type: TC
Location: 15243 - 17117 (+)
Gene ID: HRGMv2_4536_47_16
Type: CAZyme
Location: 17136 - 18548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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