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Cluster: HRGMv2_4536_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4536_44 HRGMv2_4536_44_11 9768 10562 - GT2
NULL(UNKNOWN) HRGMv2_4536_44 HRGMv2_4536_44_12 10650 12395 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4536_44 HRGMv2_4536_44_13 12392 13255 - GT6
TC HRGMv2_4536_44 HRGMv2_4536_44_14 13252 14778 - 2.A.66.1.40
CAZyme HRGMv2_4536_44 HRGMv2_4536_44_15 14785 15783 - GT2
CAZyme HRGMv2_4536_44 HRGMv2_4536_44_16 15803 16720 - GT11
CAZyme HRGMv2_4536_44 HRGMv2_4536_44_17 16717 17823 - GT4
NULL(UNKNOWN) HRGMv2_4536_44 HRGMv2_4536_44_18 18097 19002 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4536_44 HRGMv2_4536_44_19 18989 20110 - GT4
pfam HRGMv2_4536_44 HRGMv2_4536_44_20 20107 21084 - GINT1_N
CAZyme HRGMv2_4536_44 HRGMv2_4536_44_21 21081 22247 - GT4
Gene ID: HRGMv2_4536_44_11
Type: CAZyme
Location: 9768 - 10562 (-)
Gene ID: HRGMv2_4536_44_12
Type:
Location: 10650 - 12395 (-)
Gene ID: HRGMv2_4536_44_13
Type: CAZyme
Location: 12392 - 13255 (-)
Gene ID: HRGMv2_4536_44_14
Type: TC
Location: 13252 - 14778 (-)
Gene ID: HRGMv2_4536_44_15
Type: CAZyme
Location: 14785 - 15783 (-)
Gene ID: HRGMv2_4536_44_16
Type: CAZyme
Location: 15803 - 16720 (-)
Gene ID: HRGMv2_4536_44_17
Type: CAZyme
Location: 16717 - 17823 (-)
Gene ID: HRGMv2_4536_44_18
Type:
Location: 18097 - 19002 (-)
Gene ID: HRGMv2_4536_44_19
Type: CAZyme
Location: 18989 - 20110 (-)
Gene ID: HRGMv2_4536_44_20
Type: pfam
Location: 20107 - 21084 (-)
Gene ID: HRGMv2_4536_44_21
Type: CAZyme
Location: 21081 - 22247 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4536_44_21 vegetarian > omnivore 2.06786 0.01878

🧭 Explore Read Mapping of CGC

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