Cluster: HRGMv2_4536_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: fructan
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00035
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_98 | 104669 | 105622 | + | 3.A.1.1.10 |
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_99 | 105636 | 106550 | + | 3.A.1.1.29 |
| STP | HRGMv2_4536_42 | HRGMv2_4536_42_100 | 106963 | 108666 | + | SBP_bac_1 |
| CAZyme | HRGMv2_4536_42 | HRGMv2_4536_42_101 | 108710 | 110182 | + | GH32 |
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_102 | 110547 | 113159 | + | 3.A.3.2.21 |
Gene ID: HRGMv2_4536_42_98
Type: TC
Location: 104669 - 105622 (+)
Type: TC
Location: 104669 - 105622 (+)
Gene ID: HRGMv2_4536_42_99
Type: TC
Location: 105636 - 106550 (+)
Type: TC
Location: 105636 - 106550 (+)
Gene ID: HRGMv2_4536_42_100
Type: STP
Location: 106963 - 108666 (+)
Type: STP
Location: 106963 - 108666 (+)
Gene ID: HRGMv2_4536_42_101
Type: CAZyme
Location: 108710 - 110182 (+)
Type: CAZyme
Location: 108710 - 110182 (+)
Gene ID: HRGMv2_4536_42_102
Type: TC
Location: 110547 - 113159 (+)
Type: TC
Location: 110547 - 113159 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.