Cluster: HRGMv2_4536_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_01579
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_42 | HRGMv2_4536_42_52 | 53506 | 54678 | + | GT4 |
| pfam | HRGMv2_4536_42 | HRGMv2_4536_42_53 | 54672 | 55256 | + | VTT_dom |
| CAZyme | HRGMv2_4536_42 | HRGMv2_4536_42_54 | 55262 | 56311 | + | GT4 |
| pfam | HRGMv2_4536_42 | HRGMv2_4536_42_55 | 56361 | 56771 | - | ATP-synt_DE | ATP-synt_DE_N |
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_56 | 56771 | 58168 | - | 3.A.2.1.5 |
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_57 | 58214 | 59137 | - | 3.A.2.1.5 |
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_58 | 59125 | 61164 | - | 3.A.2.1.6 |
Gene ID: HRGMv2_4536_42_52
Type: CAZyme
Location: 53506 - 54678 (+)
Type: CAZyme
Location: 53506 - 54678 (+)
Gene ID: HRGMv2_4536_42_53
Type: pfam
Location: 54672 - 55256 (+)
Type: pfam
Location: 54672 - 55256 (+)
Gene ID: HRGMv2_4536_42_54
Type: CAZyme
Location: 55262 - 56311 (+)
Type: CAZyme
Location: 55262 - 56311 (+)
Gene ID: HRGMv2_4536_42_55
Type: pfam
Location: 56361 - 56771 (-)
Type: pfam
Location: 56361 - 56771 (-)
Gene ID: HRGMv2_4536_42_56
Type: TC
Location: 56771 - 58168 (-)
Type: TC
Location: 56771 - 58168 (-)
Gene ID: HRGMv2_4536_42_57
Type: TC
Location: 58214 - 59137 (-)
Type: TC
Location: 58214 - 59137 (-)
Gene ID: HRGMv2_4536_42_58
Type: TC
Location: 59125 - 61164 (-)
Type: TC
Location: 59125 - 61164 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.