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Cluster: HRGMv2_4536_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4536_42 HRGMv2_4536_42_21 22783 24078 + 3.A.1.1.44
TC HRGMv2_4536_42 HRGMv2_4536_42_22 24078 24962 + 3.A.1.1.25
TC HRGMv2_4536_42 HRGMv2_4536_42_23 24973 25809 + 3.A.1.1.34
CAZyme HRGMv2_4536_42 HRGMv2_4536_42_24 25983 28229 + GH36
CAZyme HRGMv2_4536_42 HRGMv2_4536_42_25 28251 30476 + GH13_4
CAZyme HRGMv2_4536_42 HRGMv2_4536_42_26 30554 33343 - GH2
NULL(UNKNOWN) HRGMv2_4536_42 HRGMv2_4536_42_27 33759 33950 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4536_42 HRGMv2_4536_42_28 33966 35210 + Terminase_6N | Terminase_3 | Terminase_3C
TC HRGMv2_4536_42 HRGMv2_4536_42_29 35264 35917 - 2.A.115.2.9
Gene ID: HRGMv2_4536_42_21
Type: TC
Location: 22783 - 24078 (+)
Gene ID: HRGMv2_4536_42_22
Type: TC
Location: 24078 - 24962 (+)
Gene ID: HRGMv2_4536_42_23
Type: TC
Location: 24973 - 25809 (+)
Gene ID: HRGMv2_4536_42_24
Type: CAZyme
Location: 25983 - 28229 (+)
Gene ID: HRGMv2_4536_42_25
Type: CAZyme
Location: 28251 - 30476 (+)
Gene ID: HRGMv2_4536_42_26
Type: CAZyme
Location: 30554 - 33343 (-)
Gene ID: HRGMv2_4536_42_27
Type:
Location: 33759 - 33950 (+)
Gene ID: HRGMv2_4536_42_28
Type: pfam
Location: 33966 - 35210 (+)
Gene ID: HRGMv2_4536_42_29
Type: TC
Location: 35264 - 35917 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4536_42_27 vegan > omnivore 1.19090 0.01878
HRGMv2_4536_42_27 vegetarian > omnivore 2.16737 0.01878

🧭 Explore Read Mapping of CGC

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