Cluster: HRGMv2_4536_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_11 | 12830 | 13714 | + | 3.A.1.1.20 |
| TC | HRGMv2_4536_42 | HRGMv2_4536_42_12 | 13727 | 14617 | + | 3.A.1.1.25 |
| pfam | HRGMv2_4536_42 | HRGMv2_4536_42_13 | 14627 | 14833 | + | DUF6903 |
| CAZyme | HRGMv2_4536_42 | HRGMv2_4536_42_14 | 14851 | 17022 | + | GH112 |
Gene ID: HRGMv2_4536_42_11
Type: TC
Location: 12830 - 13714 (+)
Type: TC
Location: 12830 - 13714 (+)
Gene ID: HRGMv2_4536_42_12
Type: TC
Location: 13727 - 14617 (+)
Type: TC
Location: 13727 - 14617 (+)
Gene ID: HRGMv2_4536_42_13
Type: pfam
Location: 14627 - 14833 (+)
Type: pfam
Location: 14627 - 14833 (+)
Gene ID: HRGMv2_4536_42_14
Type: CAZyme
Location: 14851 - 17022 (+)
Type: CAZyme
Location: 14851 - 17022 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.