Cluster: HRGMv2_4536_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_39 | HRGMv2_4536_39_6 | 3854 | 5356 | - | 2.A.50.2.1 |
| pfam | HRGMv2_4536_39 | HRGMv2_4536_39_7 | 5399 | 5752 | - | DUF2304 |
| CAZyme | HRGMv2_4536_39 | HRGMv2_4536_39_8 | 5749 | 6468 | - | GT2 |
| CAZyme | HRGMv2_4536_39 | HRGMv2_4536_39_9 | 6478 | 7716 | - | GT4 |
| pfam | HRGMv2_4536_39 | HRGMv2_4536_39_10 | 7718 | 8857 | - | Epimerase_2 |
| pfam | HRGMv2_4536_39 | HRGMv2_4536_39_11 | 8933 | 10081 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_4536_39 | HRGMv2_4536_39_12 | 10071 | 11120 | - | 9.B.18.2.1 |
Gene ID: HRGMv2_4536_39_6
Type: TC
Location: 3854 - 5356 (-)
Type: TC
Location: 3854 - 5356 (-)
Gene ID: HRGMv2_4536_39_7
Type: pfam
Location: 5399 - 5752 (-)
Type: pfam
Location: 5399 - 5752 (-)
Gene ID: HRGMv2_4536_39_8
Type: CAZyme
Location: 5749 - 6468 (-)
Type: CAZyme
Location: 5749 - 6468 (-)
Gene ID: HRGMv2_4536_39_9
Type: CAZyme
Location: 6478 - 7716 (-)
Type: CAZyme
Location: 6478 - 7716 (-)
Gene ID: HRGMv2_4536_39_10
Type: pfam
Location: 7718 - 8857 (-)
Type: pfam
Location: 7718 - 8857 (-)
Gene ID: HRGMv2_4536_39_11
Type: pfam
Location: 8933 - 10081 (-)
Type: pfam
Location: 8933 - 10081 (-)
Gene ID: HRGMv2_4536_39_12
Type: TC
Location: 10071 - 11120 (-)
Type: TC
Location: 10071 - 11120 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4536_39_7 | vegetarian > omnivore | 1.13479 | 0.01878 |