Cluster: HRGMv2_4536_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_01317
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_37 | HRGMv2_4536_37_70 | 72386 | 73447 | - | GT4 |
| CAZyme | HRGMv2_4536_37 | HRGMv2_4536_37_71 | 73472 | 74701 | - | GH3 |
| pfam | HRGMv2_4536_37 | HRGMv2_4536_37_72 | 74813 | 75838 | - | DUF4340 | DUF4340 |
| pfam | HRGMv2_4536_37 | HRGMv2_4536_37_73 | 75855 | 77279 | - | ABC_transp_aux | DUF7088 |
| TC | HRGMv2_4536_37 | HRGMv2_4536_37_74 | 77294 | 78157 | - | 3.A.1.132.1 |
| TC | HRGMv2_4536_37 | HRGMv2_4536_37_75 | 78157 | 79110 | - | 3.A.1.132.9 |
Gene ID: HRGMv2_4536_37_70
Type: CAZyme
Location: 72386 - 73447 (-)
Type: CAZyme
Location: 72386 - 73447 (-)
Gene ID: HRGMv2_4536_37_71
Type: CAZyme
Location: 73472 - 74701 (-)
Type: CAZyme
Location: 73472 - 74701 (-)
Gene ID: HRGMv2_4536_37_72
Type: pfam
Location: 74813 - 75838 (-)
Type: pfam
Location: 74813 - 75838 (-)
Gene ID: HRGMv2_4536_37_73
Type: pfam
Location: 75855 - 77279 (-)
Type: pfam
Location: 75855 - 77279 (-)
Gene ID: HRGMv2_4536_37_74
Type: TC
Location: 77294 - 78157 (-)
Type: TC
Location: 77294 - 78157 (-)
Gene ID: HRGMv2_4536_37_75
Type: TC
Location: 78157 - 79110 (-)
Type: TC
Location: 78157 - 79110 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.