Cluster: HRGMv2_4536_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4536_36 | HRGMv2_4536_36_11 | 12824 | 14098 | - | 3.A.1.103.5 |
| TC | HRGMv2_4536_36 | HRGMv2_4536_36_12 | 14112 | 14972 | - | 3.A.1.103.5 |
| CAZyme | HRGMv2_4536_36 | HRGMv2_4536_36_13 | 15028 | 15996 | - | GT2 |
| CAZyme | HRGMv2_4536_36 | HRGMv2_4536_36_14 | 16022 | 17020 | - | GT2 |
| pfam | HRGMv2_4536_36 | HRGMv2_4536_36_15 | 17034 | 18146 | - | ATPgrasp_TupA |
| CAZyme | HRGMv2_4536_36 | HRGMv2_4536_36_16 | 18165 | 19223 | - | GT2 |
Gene ID: HRGMv2_4536_36_11
Type: TC
Location: 12824 - 14098 (-)
Type: TC
Location: 12824 - 14098 (-)
Gene ID: HRGMv2_4536_36_12
Type: TC
Location: 14112 - 14972 (-)
Type: TC
Location: 14112 - 14972 (-)
Gene ID: HRGMv2_4536_36_13
Type: CAZyme
Location: 15028 - 15996 (-)
Type: CAZyme
Location: 15028 - 15996 (-)
Gene ID: HRGMv2_4536_36_14
Type: CAZyme
Location: 16022 - 17020 (-)
Type: CAZyme
Location: 16022 - 17020 (-)
Gene ID: HRGMv2_4536_36_15
Type: pfam
Location: 17034 - 18146 (-)
Type: pfam
Location: 17034 - 18146 (-)
Gene ID: HRGMv2_4536_36_16
Type: CAZyme
Location: 18165 - 19223 (-)
Type: CAZyme
Location: 18165 - 19223 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4536_36_15 | vegetarian > omnivore | 1.02311 | 0.01878 |
| HRGMv2_4536_36_16 | vegetarian > omnivore | 1.26377 | 0.01878 |