Cluster: HRGMv2_4536_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4536
- CGC Family ID: CGCFAM_00587
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4536_3 | HRGMv2_4536_3_19 | 21103 | 22083 | - | GT2 |
| pfam | HRGMv2_4536_3 | HRGMv2_4536_3_20 | 22106 | 23245 | - | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | ATP-grasp_4 |
| TC | HRGMv2_4536_3 | HRGMv2_4536_3_21 | 23381 | 24670 | + | 2.A.49.9.2 |
Gene ID: HRGMv2_4536_3_19
Type: CAZyme
Location: 21103 - 22083 (-)
Type: CAZyme
Location: 21103 - 22083 (-)
Gene ID: HRGMv2_4536_3_20
Type: pfam
Location: 22106 - 23245 (-)
Type: pfam
Location: 22106 - 23245 (-)
Gene ID: HRGMv2_4536_3_21
Type: TC
Location: 23381 - 24670 (+)
Type: TC
Location: 23381 - 24670 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.