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Cluster: HRGMv2_4525_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4525_3 HRGMv2_4525_3_42 43091 49168 + 1.C.39.4.6
sulfatase HRGMv2_4525_3 HRGMv2_4525_3_43 49279 50784 - S1_43
CAZyme HRGMv2_4525_3 HRGMv2_4525_3_44 50828 52597 - PL33
TF HRGMv2_4525_3 HRGMv2_4525_3_45 52599 54194 - HTH_AraC
TC HRGMv2_4525_3 HRGMv2_4525_3_46 54199 55926 - 8.A.59.2.1
STP HRGMv2_4525_3 HRGMv2_4525_3_47 56219 57526 + SBP_bac_1
TC HRGMv2_4525_3 HRGMv2_4525_3_48 57598 58506 + 3.A.1.1.11
TC HRGMv2_4525_3 HRGMv2_4525_3_49 58519 59349 + 3.A.1.1.11
sulfatase HRGMv2_4525_3 HRGMv2_4525_3_50 59377 60807 + S1_27
CAZyme HRGMv2_4525_3 HRGMv2_4525_3_51 60804 61871 + GH117
CAZyme HRGMv2_4525_3 HRGMv2_4525_3_52 61903 63051 + GH88
CAZyme HRGMv2_4525_3 HRGMv2_4525_3_53 63070 65031 + PL12_1
Gene ID: HRGMv2_4525_3_42
Type: TC
Location: 43091 - 49168 (+)
Gene ID: HRGMv2_4525_3_43
Type: sulfatase
Location: 49279 - 50784 (-)
Gene ID: HRGMv2_4525_3_44
Type: CAZyme
Location: 50828 - 52597 (-)
Gene ID: HRGMv2_4525_3_45
Type: TF
Location: 52599 - 54194 (-)
Gene ID: HRGMv2_4525_3_46
Type: TC
Location: 54199 - 55926 (-)
Gene ID: HRGMv2_4525_3_47
Type: STP
Location: 56219 - 57526 (+)
Gene ID: HRGMv2_4525_3_48
Type: TC
Location: 57598 - 58506 (+)
Gene ID: HRGMv2_4525_3_49
Type: TC
Location: 58519 - 59349 (+)
Gene ID: HRGMv2_4525_3_50
Type: sulfatase
Location: 59377 - 60807 (+)
Gene ID: HRGMv2_4525_3_51
Type: CAZyme
Location: 60804 - 61871 (+)
Gene ID: HRGMv2_4525_3_52
Type: CAZyme
Location: 61903 - 63051 (+)
Gene ID: HRGMv2_4525_3_53
Type: CAZyme
Location: 63070 - 65031 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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