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Cluster: HRGMv2_4525_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4525_38 HRGMv2_4525_38_14 16767 18833 + GH3
NULL(UNKNOWN) HRGMv2_4525_38 HRGMv2_4525_38_15 19442 20254 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_4525_38 HRGMv2_4525_38_16 20330 21937 - SBP_bac_1
TC HRGMv2_4525_38 HRGMv2_4525_38_17 21934 22797 - 3.A.1.1.20
TC HRGMv2_4525_38 HRGMv2_4525_38_18 22811 23725 - 3.A.1.1.23
TC HRGMv2_4525_38 HRGMv2_4525_38_19 23722 24837 - 3.A.1.1.38
CAZyme HRGMv2_4525_38 HRGMv2_4525_38_20 25040 26851 + GH2
NULL(UNKNOWN) HRGMv2_4525_38 HRGMv2_4525_38_21 27063 27812 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4525_38 HRGMv2_4525_38_22 27926 28759 - CE1
Gene ID: HRGMv2_4525_38_14
Type: CAZyme
Location: 16767 - 18833 (+)
Gene ID: HRGMv2_4525_38_15
Type:
Location: 19442 - 20254 (-)
Gene ID: HRGMv2_4525_38_16
Type: STP
Location: 20330 - 21937 (-)
Gene ID: HRGMv2_4525_38_17
Type: TC
Location: 21934 - 22797 (-)
Gene ID: HRGMv2_4525_38_18
Type: TC
Location: 22811 - 23725 (-)
Gene ID: HRGMv2_4525_38_19
Type: TC
Location: 23722 - 24837 (-)
Gene ID: HRGMv2_4525_38_20
Type: CAZyme
Location: 25040 - 26851 (+)
Gene ID: HRGMv2_4525_38_21
Type:
Location: 27063 - 27812 (+)
Gene ID: HRGMv2_4525_38_22
Type: CAZyme
Location: 27926 - 28759 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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