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Cluster: HRGMv2_4525_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4525_2 HRGMv2_4525_2_25 25101 27530 - GH20
TC HRGMv2_4525_2 HRGMv2_4525_2_26 27906 29285 + 3.A.1.1.40
TC HRGMv2_4525_2 HRGMv2_4525_2_27 29401 30348 + 3.A.1.1.34
TC HRGMv2_4525_2 HRGMv2_4525_2_28 30363 31208 + 3.A.1.1.39
TC HRGMv2_4525_2 HRGMv2_4525_2_29 31313 33040 + 9.B.33.1.1
NULL(UNKNOWN) HRGMv2_4525_2 HRGMv2_4525_2_30 33018 33113 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4525_2 HRGMv2_4525_2_31 33098 34060 + HTH_AraC
TC HRGMv2_4525_2 HRGMv2_4525_2_32 34812 35738 + 3.A.1.1.10
TC HRGMv2_4525_2 HRGMv2_4525_2_33 35749 36636 + 3.A.1.1.10
Gene ID: HRGMv2_4525_2_25
Type: CAZyme
Location: 25101 - 27530 (-)
Gene ID: HRGMv2_4525_2_26
Type: TC
Location: 27906 - 29285 (+)
Gene ID: HRGMv2_4525_2_27
Type: TC
Location: 29401 - 30348 (+)
Gene ID: HRGMv2_4525_2_28
Type: TC
Location: 30363 - 31208 (+)
Gene ID: HRGMv2_4525_2_29
Type: TC
Location: 31313 - 33040 (+)
Gene ID: HRGMv2_4525_2_30
Type:
Location: 33018 - 33113 (+)
Gene ID: HRGMv2_4525_2_31
Type: TF
Location: 33098 - 34060 (+)
Gene ID: HRGMv2_4525_2_32
Type: TC
Location: 34812 - 35738 (+)
Gene ID: HRGMv2_4525_2_33
Type: TC
Location: 35749 - 36636 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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