dbCAN Logo

Cluster: HRGMv2_4525_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4525_36 HRGMv2_4525_36_16 16063 17835 - 3.A.1.135.5
TC HRGMv2_4525_36 HRGMv2_4525_36_17 17854 19602 - 3.A.1.135.5
TF HRGMv2_4525_36 HRGMv2_4525_36_18 19858 20565 + LytTR
pfam HRGMv2_4525_36 HRGMv2_4525_36_19 20562 21860 + HATPase_c_5
CAZyme HRGMv2_4525_36 HRGMv2_4525_36_20 22090 25203 + GH3
NULL(UNKNOWN) HRGMv2_4525_36 HRGMv2_4525_36_21 25205 25630 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4525_36 HRGMv2_4525_36_22 25716 28124 + GH2
NULL(UNKNOWN) HRGMv2_4525_36 HRGMv2_4525_36_23 28129 28677 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4525_36 HRGMv2_4525_36_24 28674 31064 + GH3
TC HRGMv2_4525_36 HRGMv2_4525_36_25 31180 31821 - 2.A.115.2.8
Gene ID: HRGMv2_4525_36_16
Type: TC
Location: 16063 - 17835 (-)
Gene ID: HRGMv2_4525_36_17
Type: TC
Location: 17854 - 19602 (-)
Gene ID: HRGMv2_4525_36_18
Type: TF
Location: 19858 - 20565 (+)
Gene ID: HRGMv2_4525_36_19
Type: pfam
Location: 20562 - 21860 (+)
Gene ID: HRGMv2_4525_36_20
Type: CAZyme
Location: 22090 - 25203 (+)
Gene ID: HRGMv2_4525_36_21
Type:
Location: 25205 - 25630 (+)
Gene ID: HRGMv2_4525_36_22
Type: CAZyme
Location: 25716 - 28124 (+)
Gene ID: HRGMv2_4525_36_23
Type:
Location: 28129 - 28677 (+)
Gene ID: HRGMv2_4525_36_24
Type: CAZyme
Location: 28674 - 31064 (+)
Gene ID: HRGMv2_4525_36_25
Type: TC
Location: 31180 - 31821 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List