Cluster: HRGMv2_4525_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4525
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4525_7 | HRGMv2_4525_7_68 | 73395 | 74108 | - | 3.A.1.122.7 |
| STP | HRGMv2_4525_7 | HRGMv2_4525_7_69 | 74326 | 74919 | + | TetR_N |
| pfam | HRGMv2_4525_7 | HRGMv2_4525_7_70 | 75002 | 76669 | - | ILVD_EDD_N | ILV_EDD_C |
| CAZyme | HRGMv2_4525_7 | HRGMv2_4525_7_71 | 76958 | 78382 | - | GT5 |
| pfam | HRGMv2_4525_7 | HRGMv2_4525_7_72 | 78458 | 79582 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4525_7 | HRGMv2_4525_7_73 | 79576 | 80790 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_4525_7 | HRGMv2_4525_7_74 | 80852 | 82921 | - | CBM48 | GH13_9 |
Gene ID: HRGMv2_4525_7_68
Type: TC
Location: 73395 - 74108 (-)
Type: TC
Location: 73395 - 74108 (-)
Gene ID: HRGMv2_4525_7_69
Type: STP
Location: 74326 - 74919 (+)
Type: STP
Location: 74326 - 74919 (+)
Gene ID: HRGMv2_4525_7_70
Type: pfam
Location: 75002 - 76669 (-)
Type: pfam
Location: 75002 - 76669 (-)
Gene ID: HRGMv2_4525_7_71
Type: CAZyme
Location: 76958 - 78382 (-)
Type: CAZyme
Location: 76958 - 78382 (-)
Gene ID: HRGMv2_4525_7_72
Type: pfam
Location: 78458 - 79582 (-)
Type: pfam
Location: 78458 - 79582 (-)
Gene ID: HRGMv2_4525_7_73
Type: pfam
Location: 79576 - 80790 (-)
Type: pfam
Location: 79576 - 80790 (-)
Gene ID: HRGMv2_4525_7_74
Type: CAZyme
Location: 80852 - 82921 (-)
Type: CAZyme
Location: 80852 - 82921 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Anaerofilum
Species
Anaerofilum excrementigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.