Cluster: HRGMv2_4525_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4525
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4525_6 | HRGMv2_4525_6_27 | 28915 | 30291 | + | 3.A.1.1.45 |
| TC | HRGMv2_4525_6 | HRGMv2_4525_6_28 | 30306 | 31178 | + | 3.A.1.1.45 |
| TC | HRGMv2_4525_6 | HRGMv2_4525_6_29 | 31178 | 32038 | + | 3.A.1.1.28 |
| CAZyme | HRGMv2_4525_6 | HRGMv2_4525_6_30 | 32214 | 33569 | + | GH32 |
| CAZyme | HRGMv2_4525_6 | HRGMv2_4525_6_31 | 33656 | 35767 | + | GH13_4 |
| CAZyme | HRGMv2_4525_6 | HRGMv2_4525_6_32 | 35846 | 37537 | - | GH13_31 |
Gene ID: HRGMv2_4525_6_27
Type: TC
Location: 28915 - 30291 (+)
Type: TC
Location: 28915 - 30291 (+)
Gene ID: HRGMv2_4525_6_28
Type: TC
Location: 30306 - 31178 (+)
Type: TC
Location: 30306 - 31178 (+)
Gene ID: HRGMv2_4525_6_29
Type: TC
Location: 31178 - 32038 (+)
Type: TC
Location: 31178 - 32038 (+)
Gene ID: HRGMv2_4525_6_30
Type: CAZyme
Location: 32214 - 33569 (+)
Type: CAZyme
Location: 32214 - 33569 (+)
Gene ID: HRGMv2_4525_6_31
Type: CAZyme
Location: 33656 - 35767 (+)
Type: CAZyme
Location: 33656 - 35767 (+)
Gene ID: HRGMv2_4525_6_32
Type: CAZyme
Location: 35846 - 37537 (-)
Type: CAZyme
Location: 35846 - 37537 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Anaerofilum
Species
Anaerofilum excrementigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4525_6_31 | vegan > omnivore | 1.72619 | 0.01287 |