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Cluster: HRGMv2_4525_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4525_4 HRGMv2_4525_4_22 23030 24499 + GH79
NULL(UNKNOWN) HRGMv2_4525_4 HRGMv2_4525_4_23 24661 24792 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4525_4 HRGMv2_4525_4_24 24810 25541 - 3.A.1.1.47
TC HRGMv2_4525_4 HRGMv2_4525_4_25 25563 26477 - 3.A.1.1.18
STP HRGMv2_4525_4 HRGMv2_4525_4_26 26674 27771 - SBP_bac_1
NULL(UNKNOWN) HRGMv2_4525_4 HRGMv2_4525_4_27 27768 27956 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4525_4 HRGMv2_4525_4_28 28043 29641 - GH136
TF HRGMv2_4525_4 HRGMv2_4525_4_29 30001 30873 + HTH_AraC | HTH_AraC
pfam HRGMv2_4525_4 HRGMv2_4525_4_30 31093 32280 + Bmp | Bmp
TC HRGMv2_4525_4 HRGMv2_4525_4_31 32413 33942 + 3.A.1.2.12
TC HRGMv2_4525_4 HRGMv2_4525_4_32 33939 35114 + 3.A.1.2.12
TC HRGMv2_4525_4 HRGMv2_4525_4_33 35111 36070 + 3.A.1.2.17
Gene ID: HRGMv2_4525_4_22
Type: CAZyme
Location: 23030 - 24499 (+)
Gene ID: HRGMv2_4525_4_23
Type:
Location: 24661 - 24792 (-)
Gene ID: HRGMv2_4525_4_24
Type: TC
Location: 24810 - 25541 (-)
Gene ID: HRGMv2_4525_4_25
Type: TC
Location: 25563 - 26477 (-)
Gene ID: HRGMv2_4525_4_26
Type: STP
Location: 26674 - 27771 (-)
Gene ID: HRGMv2_4525_4_27
Type:
Location: 27768 - 27956 (-)
Gene ID: HRGMv2_4525_4_28
Type: CAZyme
Location: 28043 - 29641 (-)
Gene ID: HRGMv2_4525_4_29
Type: TF
Location: 30001 - 30873 (+)
Gene ID: HRGMv2_4525_4_30
Type: pfam
Location: 31093 - 32280 (+)
Gene ID: HRGMv2_4525_4_31
Type: TC
Location: 32413 - 33942 (+)
Gene ID: HRGMv2_4525_4_32
Type: TC
Location: 33939 - 35114 (+)
Gene ID: HRGMv2_4525_4_33
Type: TC
Location: 35111 - 36070 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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