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Cluster: HRGMv2_4525_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4525_1 HRGMv2_4525_1_20 19952 21430 + GH32
TC HRGMv2_4525_1 HRGMv2_4525_1_21 21877 23220 + 3.A.1.1.45
TC HRGMv2_4525_1 HRGMv2_4525_1_22 23321 24214 + 3.A.1.1.45
TC HRGMv2_4525_1 HRGMv2_4525_1_23 24211 25086 + 3.A.1.1.45
TF HRGMv2_4525_1 HRGMv2_4525_1_24 25104 26075 + LacI
CAZyme HRGMv2_4525_1 HRGMv2_4525_1_25 26094 27548 + GH13_18
pfam HRGMv2_4525_1 HRGMv2_4525_1_26 27666 28970 + Phosphodiest
TC HRGMv2_4525_1 HRGMv2_4525_1_27 29068 30126 - 3.A.1.2.15
STP HRGMv2_4525_1 HRGMv2_4525_1_28 30083 31012 - Peripla_BP_1
TC HRGMv2_4525_1 HRGMv2_4525_1_29 31009 32829 - 8.A.59.2.1
TF HRGMv2_4525_1 HRGMv2_4525_1_30 32851 34458 - HTH_AraC | HTH_AraC
TC HRGMv2_4525_1 HRGMv2_4525_1_31 34856 35911 - 3.A.1.2.3
TC HRGMv2_4525_1 HRGMv2_4525_1_32 35930 37429 - 3.A.1.2.3
STP HRGMv2_4525_1 HRGMv2_4525_1_33 37575 38726 - Peripla_BP_3
NULL(UNKNOWN) HRGMv2_4525_1 HRGMv2_4525_1_34 39009 39464 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4525_1 HRGMv2_4525_1_35 39708 43238 + 3.A.1.122.2
Gene ID: HRGMv2_4525_1_20
Type: CAZyme
Location: 19952 - 21430 (+)
Gene ID: HRGMv2_4525_1_21
Type: TC
Location: 21877 - 23220 (+)
Gene ID: HRGMv2_4525_1_22
Type: TC
Location: 23321 - 24214 (+)
Gene ID: HRGMv2_4525_1_23
Type: TC
Location: 24211 - 25086 (+)
Gene ID: HRGMv2_4525_1_24
Type: TF
Location: 25104 - 26075 (+)
Gene ID: HRGMv2_4525_1_25
Type: CAZyme
Location: 26094 - 27548 (+)
Gene ID: HRGMv2_4525_1_26
Type: pfam
Location: 27666 - 28970 (+)
Gene ID: HRGMv2_4525_1_27
Type: TC
Location: 29068 - 30126 (-)
Gene ID: HRGMv2_4525_1_28
Type: STP
Location: 30083 - 31012 (-)
Gene ID: HRGMv2_4525_1_29
Type: TC
Location: 31009 - 32829 (-)
Gene ID: HRGMv2_4525_1_30
Type: TF
Location: 32851 - 34458 (-)
Gene ID: HRGMv2_4525_1_31
Type: TC
Location: 34856 - 35911 (-)
Gene ID: HRGMv2_4525_1_32
Type: TC
Location: 35930 - 37429 (-)
Gene ID: HRGMv2_4525_1_33
Type: STP
Location: 37575 - 38726 (-)
Gene ID: HRGMv2_4525_1_34
Type:
Location: 39009 - 39464 (-)
Gene ID: HRGMv2_4525_1_35
Type: TC
Location: 39708 - 43238 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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