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Cluster: HRGMv2_4519_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4519_9 HRGMv2_4519_9_10 9022 11247 + 3.A.1.135.6
pfam HRGMv2_4519_9 HRGMv2_4519_9_11 11247 11717 + ABC_membrane
TC HRGMv2_4519_9 HRGMv2_4519_9_12 11669 13063 + 3.A.1.135.6
CAZyme HRGMv2_4519_9 HRGMv2_4519_9_13 13133 14770 - GH165
TC HRGMv2_4519_9 HRGMv2_4519_9_14 14795 16168 - 4.A.1.2.1
TF HRGMv2_4519_9 HRGMv2_4519_9_15 16315 17340 - LacI
CAZyme HRGMv2_4519_9 HRGMv2_4519_9_16 17965 19671 - GH154
CAZyme HRGMv2_4519_9 HRGMv2_4519_9_17 19677 21473 - GH2
CAZyme HRGMv2_4519_9 HRGMv2_4519_9_18 21588 22793 - GH88
TC HRGMv2_4519_9 HRGMv2_4519_9_19 23044 23904 - 3.A.1.1.36
TC HRGMv2_4519_9 HRGMv2_4519_9_20 23923 24846 - 3.A.1.1.20
STP HRGMv2_4519_9 HRGMv2_4519_9_21 24925 26319 - SBP_bac_1
TC HRGMv2_4519_9 HRGMv2_4519_9_22 26609 28399 + 8.A.59.2.1
TF HRGMv2_4519_9 HRGMv2_4519_9_23 28396 29718 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4519_9 HRGMv2_4519_9_24 29708 31531 + PL33_1
Gene ID: HRGMv2_4519_9_10
Type: TC
Location: 9022 - 11247 (+)
Gene ID: HRGMv2_4519_9_11
Type: pfam
Location: 11247 - 11717 (+)
Gene ID: HRGMv2_4519_9_12
Type: TC
Location: 11669 - 13063 (+)
Gene ID: HRGMv2_4519_9_13
Type: CAZyme
Location: 13133 - 14770 (-)
Gene ID: HRGMv2_4519_9_14
Type: TC
Location: 14795 - 16168 (-)
Gene ID: HRGMv2_4519_9_15
Type: TF
Location: 16315 - 17340 (-)
Gene ID: HRGMv2_4519_9_16
Type: CAZyme
Location: 17965 - 19671 (-)
Gene ID: HRGMv2_4519_9_17
Type: CAZyme
Location: 19677 - 21473 (-)
Gene ID: HRGMv2_4519_9_18
Type: CAZyme
Location: 21588 - 22793 (-)
Gene ID: HRGMv2_4519_9_19
Type: TC
Location: 23044 - 23904 (-)
Gene ID: HRGMv2_4519_9_20
Type: TC
Location: 23923 - 24846 (-)
Gene ID: HRGMv2_4519_9_21
Type: STP
Location: 24925 - 26319 (-)
Gene ID: HRGMv2_4519_9_22
Type: TC
Location: 26609 - 28399 (+)
Gene ID: HRGMv2_4519_9_23
Type: TF
Location: 28396 - 29718 (+)
Gene ID: HRGMv2_4519_9_24
Type: CAZyme
Location: 29708 - 31531 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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