Cluster: HRGMv2_4519_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4519
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4519_4 | HRGMv2_4519_4_5 | 3300 | 5537 | + | GH3 |
| pfam | HRGMv2_4519_4 | HRGMv2_4519_4_6 | 5613 | 6230 | - | Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8 |
| TC | HRGMv2_4519_4 | HRGMv2_4519_4_7 | 6244 | 6906 | - | 5.A.1.2.7 |
| CAZyme | HRGMv2_4519_4 | HRGMv2_4519_4_8 | 7155 | 8327 | + | GT4 |
| pfam | HRGMv2_4519_4 | HRGMv2_4519_4_9 | 8321 | 8905 | + | VTT_dom |
| CAZyme | HRGMv2_4519_4 | HRGMv2_4519_4_10 | 8910 | 9953 | + | GT4 |
| pfam | HRGMv2_4519_4 | HRGMv2_4519_4_11 | 10298 | 10705 | - | ATP-synt_DE | ATP-synt_DE_N |
| TC | HRGMv2_4519_4 | HRGMv2_4519_4_12 | 10706 | 12103 | - | 3.A.2.1.5 |
| TC | HRGMv2_4519_4 | HRGMv2_4519_4_13 | 12134 | 13051 | - | 3.A.2.1.5 |
| TC | HRGMv2_4519_4 | HRGMv2_4519_4_14 | 13039 | 15078 | - | 3.A.2.1.5 |
| pfam | HRGMv2_4519_4 | HRGMv2_4519_4_15 | 15075 | 15563 | - | ATP-synt_B |
| TC | HRGMv2_4519_4 | HRGMv2_4519_4_16 | 15615 | 15830 | - | 3.A.2.1.5 |
| TC | HRGMv2_4519_4 | HRGMv2_4519_4_17 | 15908 | 16603 | - | 3.A.2.1.5 |
Gene ID: HRGMv2_4519_4_5
Type: CAZyme
Location: 3300 - 5537 (+)
Type: CAZyme
Location: 3300 - 5537 (+)
Gene ID: HRGMv2_4519_4_6
Type: pfam
Location: 5613 - 6230 (-)
Type: pfam
Location: 5613 - 6230 (-)
Gene ID: HRGMv2_4519_4_7
Type: TC
Location: 6244 - 6906 (-)
Type: TC
Location: 6244 - 6906 (-)
Gene ID: HRGMv2_4519_4_8
Type: CAZyme
Location: 7155 - 8327 (+)
Type: CAZyme
Location: 7155 - 8327 (+)
Gene ID: HRGMv2_4519_4_9
Type: pfam
Location: 8321 - 8905 (+)
Type: pfam
Location: 8321 - 8905 (+)
Gene ID: HRGMv2_4519_4_10
Type: CAZyme
Location: 8910 - 9953 (+)
Type: CAZyme
Location: 8910 - 9953 (+)
Gene ID: HRGMv2_4519_4_11
Type: pfam
Location: 10298 - 10705 (-)
Type: pfam
Location: 10298 - 10705 (-)
Gene ID: HRGMv2_4519_4_12
Type: TC
Location: 10706 - 12103 (-)
Type: TC
Location: 10706 - 12103 (-)
Gene ID: HRGMv2_4519_4_13
Type: TC
Location: 12134 - 13051 (-)
Type: TC
Location: 12134 - 13051 (-)
Gene ID: HRGMv2_4519_4_14
Type: TC
Location: 13039 - 15078 (-)
Type: TC
Location: 13039 - 15078 (-)
Gene ID: HRGMv2_4519_4_15
Type: pfam
Location: 15075 - 15563 (-)
Type: pfam
Location: 15075 - 15563 (-)
Gene ID: HRGMv2_4519_4_16
Type: TC
Location: 15615 - 15830 (-)
Type: TC
Location: 15615 - 15830 (-)
Gene ID: HRGMv2_4519_4_17
Type: TC
Location: 15908 - 16603 (-)
Type: TC
Location: 15908 - 16603 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.