Cluster: HRGMv2_4519_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4519
- CGC Family ID: CGCFAM_01316
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4519_59 | HRGMv2_4519_59_1 | 124 | 1884 | + | 3.A.1.121.4 |
| CAZyme | HRGMv2_4519_59 | HRGMv2_4519_59_2 | 2111 | 2881 | + | GT111 |
| CAZyme | HRGMv2_4519_59 | HRGMv2_4519_59_3 | 2874 | 3767 | + | GT2 |
| pfam | HRGMv2_4519_59 | HRGMv2_4519_59_4 | 3764 | 5518 | + | Hydrolase | Hydrolase_like |
| CAZyme | HRGMv2_4519_59 | HRGMv2_4519_59_5 | 5532 | 6533 | + | GT2 |
Gene ID: HRGMv2_4519_59_1
Type: TC
Location: 124 - 1884 (+)
Type: TC
Location: 124 - 1884 (+)
Gene ID: HRGMv2_4519_59_2
Type: CAZyme
Location: 2111 - 2881 (+)
Type: CAZyme
Location: 2111 - 2881 (+)
Gene ID: HRGMv2_4519_59_3
Type: CAZyme
Location: 2874 - 3767 (+)
Type: CAZyme
Location: 2874 - 3767 (+)
Gene ID: HRGMv2_4519_59_4
Type: pfam
Location: 3764 - 5518 (+)
Type: pfam
Location: 3764 - 5518 (+)
Gene ID: HRGMv2_4519_59_5
Type: CAZyme
Location: 5532 - 6533 (+)
Type: CAZyme
Location: 5532 - 6533 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.