Cluster: HRGMv2_4519_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4519
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4519_55 | HRGMv2_4519_55_3 | 1549 | 3678 | + | 4.A.1.1.9 |
| STP | HRGMv2_4519_55 | HRGMv2_4519_55_4 | 3834 | 4481 | + | TetR_N |
| TC | HRGMv2_4519_55 | HRGMv2_4519_55_5 | 4608 | 5918 | + | 2.A.1.21.3 |
| TF | HRGMv2_4519_55 | HRGMv2_4519_55_6 | 5925 | 6779 | - | MerR |
| TC | HRGMv2_4519_55 | HRGMv2_4519_55_7 | 6863 | 7522 | + | 2.A.115.1.2 |
| CAZyme | HRGMv2_4519_55 | HRGMv2_4519_55_8 | 7597 | 8520 | + | GT2 |
Gene ID: HRGMv2_4519_55_3
Type: TC
Location: 1549 - 3678 (+)
Type: TC
Location: 1549 - 3678 (+)
Gene ID: HRGMv2_4519_55_4
Type: STP
Location: 3834 - 4481 (+)
Type: STP
Location: 3834 - 4481 (+)
Gene ID: HRGMv2_4519_55_5
Type: TC
Location: 4608 - 5918 (+)
Type: TC
Location: 4608 - 5918 (+)
Gene ID: HRGMv2_4519_55_6
Type: TF
Location: 5925 - 6779 (-)
Type: TF
Location: 5925 - 6779 (-)
Gene ID: HRGMv2_4519_55_7
Type: TC
Location: 6863 - 7522 (+)
Type: TC
Location: 6863 - 7522 (+)
Gene ID: HRGMv2_4519_55_8
Type: CAZyme
Location: 7597 - 8520 (+)
Type: CAZyme
Location: 7597 - 8520 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.