Cluster: HRGMv2_4519_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4519
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4519_40 | HRGMv2_4519_40_7 | 5668 | 6243 | + | 4.F.1.1.7 |
| NULL(UNKNOWN) | HRGMv2_4519_40 | HRGMv2_4519_40_8 | 6310 | 8205 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4519_40 | HRGMv2_4519_40_9 | 8282 | 9676 | + | tRNA-synt_1e | DALR_2 | tRNA-synt_1g | tRNA-synt_1g | CysS_C |
| CAZyme | HRGMv2_4519_40 | HRGMv2_4519_40_10 | 9755 | 12700 | + | GT39 |
Gene ID: HRGMv2_4519_40_7
Type: TC
Location: 5668 - 6243 (+)
Type: TC
Location: 5668 - 6243 (+)
Gene ID: HRGMv2_4519_40_8
Type:
Location: 6310 - 8205 (+)
Type:
Location: 6310 - 8205 (+)
Gene ID: HRGMv2_4519_40_9
Type: pfam
Location: 8282 - 9676 (+)
Type: pfam
Location: 8282 - 9676 (+)
Gene ID: HRGMv2_4519_40_10
Type: CAZyme
Location: 9755 - 12700 (+)
Type: CAZyme
Location: 9755 - 12700 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.