Cluster: HRGMv2_4519_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4519
- CGC Family ID: CGCFAM_01317
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4519_36 | HRGMv2_4519_36_1 | 3 | 950 | - | GH3 |
| pfam | HRGMv2_4519_36 | HRGMv2_4519_36_2 | 1054 | 2073 | - | DUF4340 | DUF4340 |
| pfam | HRGMv2_4519_36 | HRGMv2_4519_36_3 | 2089 | 3393 | - | DUF7088 |
| TC | HRGMv2_4519_36 | HRGMv2_4519_36_4 | 3412 | 4275 | - | 3.A.1.132.1 |
| TC | HRGMv2_4519_36 | HRGMv2_4519_36_5 | 4277 | 5239 | - | 3.A.1.132.9 |
Gene ID: HRGMv2_4519_36_1
Type: CAZyme
Location: 3 - 950 (-)
Type: CAZyme
Location: 3 - 950 (-)
Gene ID: HRGMv2_4519_36_2
Type: pfam
Location: 1054 - 2073 (-)
Type: pfam
Location: 1054 - 2073 (-)
Gene ID: HRGMv2_4519_36_3
Type: pfam
Location: 2089 - 3393 (-)
Type: pfam
Location: 2089 - 3393 (-)
Gene ID: HRGMv2_4519_36_4
Type: TC
Location: 3412 - 4275 (-)
Type: TC
Location: 3412 - 4275 (-)
Gene ID: HRGMv2_4519_36_5
Type: TC
Location: 4277 - 5239 (-)
Type: TC
Location: 4277 - 5239 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.