Cluster: HRGMv2_4519_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4519
- CGC Family ID: CGCFAM_00342
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4519_17 | HRGMv2_4519_17_10 | 11994 | 13877 | - | GH13_4 |
| CAZyme | HRGMv2_4519_17 | HRGMv2_4519_17_11 | 13874 | 16144 | - | GH36 |
| TC | HRGMv2_4519_17 | HRGMv2_4519_17_12 | 16282 | 17118 | - | 3.A.1.1.23 |
| TC | HRGMv2_4519_17 | HRGMv2_4519_17_13 | 17123 | 18007 | - | 3.A.1.1.25 |
| TC | HRGMv2_4519_17 | HRGMv2_4519_17_14 | 18007 | 19281 | - | 3.A.1.1.44 |
Gene ID: HRGMv2_4519_17_10
Type: CAZyme
Location: 11994 - 13877 (-)
Type: CAZyme
Location: 11994 - 13877 (-)
Gene ID: HRGMv2_4519_17_11
Type: CAZyme
Location: 13874 - 16144 (-)
Type: CAZyme
Location: 13874 - 16144 (-)
Gene ID: HRGMv2_4519_17_12
Type: TC
Location: 16282 - 17118 (-)
Type: TC
Location: 16282 - 17118 (-)
Gene ID: HRGMv2_4519_17_13
Type: TC
Location: 17123 - 18007 (-)
Type: TC
Location: 17123 - 18007 (-)
Gene ID: HRGMv2_4519_17_14
Type: TC
Location: 18007 - 19281 (-)
Type: TC
Location: 18007 - 19281 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.