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Cluster: HRGMv2_4519_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4519_15 HRGMv2_4519_15_12 12490 13500 - GT100
TC HRGMv2_4519_15 HRGMv2_4519_15_13 13497 14780 - 3.A.1.103.5
TC HRGMv2_4519_15 HRGMv2_4519_15_14 14793 15671 - 3.A.1.103.5
pfam HRGMv2_4519_15 HRGMv2_4519_15_15 15979 16698 - NMN_transporter
pfam HRGMv2_4519_15 HRGMv2_4519_15_16 16920 18710 - tRNA-synt_2b | HGTP_anticodon | tRNA_SAD
TC HRGMv2_4519_15 HRGMv2_4519_15_17 19243 20097 + 3.A.1.3.27
TC HRGMv2_4519_15 HRGMv2_4519_15_18 20180 20947 + 3.A.1.3.20
TC HRGMv2_4519_15 HRGMv2_4519_15_19 20934 21650 + 3.A.1.3.25
Gene ID: HRGMv2_4519_15_12
Type: CAZyme
Location: 12490 - 13500 (-)
Gene ID: HRGMv2_4519_15_13
Type: TC
Location: 13497 - 14780 (-)
Gene ID: HRGMv2_4519_15_14
Type: TC
Location: 14793 - 15671 (-)
Gene ID: HRGMv2_4519_15_15
Type: pfam
Location: 15979 - 16698 (-)
Gene ID: HRGMv2_4519_15_16
Type: pfam
Location: 16920 - 18710 (-)
Gene ID: HRGMv2_4519_15_17
Type: TC
Location: 19243 - 20097 (+)
Gene ID: HRGMv2_4519_15_18
Type: TC
Location: 20180 - 20947 (+)
Gene ID: HRGMv2_4519_15_19
Type: TC
Location: 20934 - 21650 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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