Cluster: HRGMv2_4519_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4519
- CGC Family ID: CGCFAM_00056
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4519_10 | HRGMv2_4519_10_29 | 30740 | 31333 | + | CBM13 |
| TC | HRGMv2_4519_10 | HRGMv2_4519_10_30 | 31471 | 32658 | + | 1.I.1.1.3 |
| STP | HRGMv2_4519_10 | HRGMv2_4519_10_31 | 32749 | 34182 | - | HATPase_c | HisKA |
| TF | HRGMv2_4519_10 | HRGMv2_4519_10_32 | 34179 | 34862 | - | Trans_reg_C |
| TC | HRGMv2_4519_10 | HRGMv2_4519_10_33 | 35091 | 38006 | - | 9.B.74.1.3 |
Gene ID: HRGMv2_4519_10_29
Type: CAZyme
Location: 30740 - 31333 (+)
Type: CAZyme
Location: 30740 - 31333 (+)
Gene ID: HRGMv2_4519_10_30
Type: TC
Location: 31471 - 32658 (+)
Type: TC
Location: 31471 - 32658 (+)
Gene ID: HRGMv2_4519_10_31
Type: STP
Location: 32749 - 34182 (-)
Type: STP
Location: 32749 - 34182 (-)
Gene ID: HRGMv2_4519_10_32
Type: TF
Location: 34179 - 34862 (-)
Type: TF
Location: 34179 - 34862 (-)
Gene ID: HRGMv2_4519_10_33
Type: TC
Location: 35091 - 38006 (-)
Type: TC
Location: 35091 - 38006 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.