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Cluster: HRGMv2_4519_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4519_2 HRGMv2_4519_2_56 55728 57230 - 2.A.50.2.1
pfam HRGMv2_4519_2 HRGMv2_4519_2_57 57273 57626 - DUF2304
CAZyme HRGMv2_4519_2 HRGMv2_4519_2_58 57626 58339 - GT2
CAZyme HRGMv2_4519_2 HRGMv2_4519_2_59 58364 59587 - GT4
pfam HRGMv2_4519_2 HRGMv2_4519_2_60 59589 60728 - Epimerase_2
pfam HRGMv2_4519_2 HRGMv2_4519_2_61 60751 61935 - Epimerase | Polysacc_synt_C
TC HRGMv2_4519_2 HRGMv2_4519_2_62 61925 62974 - 9.B.18.2.1
peptidase HRGMv2_4519_2 HRGMv2_4519_2_63 63162 64376 + M20.UPB
TC HRGMv2_4519_2 HRGMv2_4519_2_64 64912 65139 + 3.D.1.6.4
Gene ID: HRGMv2_4519_2_56
Type: TC
Location: 55728 - 57230 (-)
Gene ID: HRGMv2_4519_2_57
Type: pfam
Location: 57273 - 57626 (-)
Gene ID: HRGMv2_4519_2_58
Type: CAZyme
Location: 57626 - 58339 (-)
Gene ID: HRGMv2_4519_2_59
Type: CAZyme
Location: 58364 - 59587 (-)
Gene ID: HRGMv2_4519_2_60
Type: pfam
Location: 59589 - 60728 (-)
Gene ID: HRGMv2_4519_2_61
Type: pfam
Location: 60751 - 61935 (-)
Gene ID: HRGMv2_4519_2_62
Type: TC
Location: 61925 - 62974 (-)
Gene ID: HRGMv2_4519_2_63
Type: peptidase
Location: 63162 - 64376 (+)
Gene ID: HRGMv2_4519_2_64
Type: TC
Location: 64912 - 65139 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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