Cluster: HRGMv2_4436_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4436
- CGC Family ID: CGCFAM_00132
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4436_11 | HRGMv2_4436_11_23 | 23696 | 24742 | - | 9.B.18.2.1 |
| pfam | HRGMv2_4436_11 | HRGMv2_4436_11_24 | 24766 | 26046 | - | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | HRGMv2_4436_11 | HRGMv2_4436_11_25 | 26557 | 27762 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_4436_11 | HRGMv2_4436_11_26 | 27759 | 28895 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4436_11 | HRGMv2_4436_11_27 | 28888 | 30111 | - | GT5 |
| NULL(UNKNOWN) | HRGMv2_4436_11 | HRGMv2_4436_11_28 | 30124 | 30930 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4436_11 | HRGMv2_4436_11_29 | 30951 | 32249 | - | GT4 |
| pfam | HRGMv2_4436_11 | HRGMv2_4436_11_30 | 32646 | 33527 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_4436_11 | HRGMv2_4436_11_31 | 33517 | 34356 | - | GT2 |
| TC | HRGMv2_4436_11 | HRGMv2_4436_11_32 | 34474 | 35835 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_4436_11_23
Type: TC
Location: 23696 - 24742 (-)
Type: TC
Location: 23696 - 24742 (-)
Gene ID: HRGMv2_4436_11_24
Type: pfam
Location: 24766 - 26046 (-)
Type: pfam
Location: 24766 - 26046 (-)
Gene ID: HRGMv2_4436_11_25
Type: CAZyme
Location: 26557 - 27762 (-)
Type: CAZyme
Location: 26557 - 27762 (-)
Gene ID: HRGMv2_4436_11_26
Type:
Location: 27759 - 28895 (-)
Type:
Location: 27759 - 28895 (-)
Gene ID: HRGMv2_4436_11_27
Type: CAZyme
Location: 28888 - 30111 (-)
Type: CAZyme
Location: 28888 - 30111 (-)
Gene ID: HRGMv2_4436_11_28
Type:
Location: 30124 - 30930 (-)
Type:
Location: 30124 - 30930 (-)
Gene ID: HRGMv2_4436_11_29
Type: CAZyme
Location: 30951 - 32249 (-)
Type: CAZyme
Location: 30951 - 32249 (-)
Gene ID: HRGMv2_4436_11_30
Type: pfam
Location: 32646 - 33527 (-)
Type: pfam
Location: 32646 - 33527 (-)
Gene ID: HRGMv2_4436_11_31
Type: CAZyme
Location: 33517 - 34356 (-)
Type: CAZyme
Location: 33517 - 34356 (-)
Gene ID: HRGMv2_4436_11_32
Type: TC
Location: 34474 - 35835 (-)
Type: TC
Location: 34474 - 35835 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934547065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4436_11_24 | vegetarian > omnivore | 3.08151 | 0.02439 |
| HRGMv2_4436_11_24 | vegan > omnivore | 3.04293 | 0.00785 |
| HRGMv2_4436_11_25 | vegan > omnivore | 2.16367 | 0.00785 |
| HRGMv2_4436_11_28 | vegetarian > vegan | 1.81926 | 0.04277 |
| HRGMv2_4436_11_29 | vegetarian > vegan | 1.41139 | 0.02932 |