Cluster: HRGMv2_4434_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4434
- CGC Family ID: CGCFAM_00281
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4434_28 | HRGMv2_4434_28_11 | 14607 | 15359 | - | 3.A.1.103.4 |
| TC | HRGMv2_4434_28 | HRGMv2_4434_28_12 | 15379 | 16161 | - | 3.A.1.103.4 |
| NULL(UNKNOWN) | HRGMv2_4434_28 | HRGMv2_4434_28_13 | 16158 | 17558 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4434_28 | HRGMv2_4434_28_14 | 17555 | 18406 | - | GT2 |
| CAZyme | HRGMv2_4434_28 | HRGMv2_4434_28_15 | 18396 | 19637 | - | GT4 |
| pfam | HRGMv2_4434_28 | HRGMv2_4434_28_16 | 20117 | 20986 | - | DegV |
| TC | HRGMv2_4434_28 | HRGMv2_4434_28_17 | 21528 | 22730 | - | 2.A.1.60.2 |
| pfam | HRGMv2_4434_28 | HRGMv2_4434_28_18 | 23304 | 24056 | + | TehB | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| pfam | HRGMv2_4434_28 | HRGMv2_4434_28_19 | 24178 | 24900 | + | ATP_bind_3 |
| TC | HRGMv2_4434_28 | HRGMv2_4434_28_20 | 25110 | 26873 | + | 3.A.1.106.3 |
| TC | HRGMv2_4434_28 | HRGMv2_4434_28_21 | 26873 | 27910 | + | 3.A.1.106.3 |
Gene ID: HRGMv2_4434_28_11
Type: TC
Location: 14607 - 15359 (-)
Type: TC
Location: 14607 - 15359 (-)
Gene ID: HRGMv2_4434_28_12
Type: TC
Location: 15379 - 16161 (-)
Type: TC
Location: 15379 - 16161 (-)
Gene ID: HRGMv2_4434_28_13
Type:
Location: 16158 - 17558 (-)
Type:
Location: 16158 - 17558 (-)
Gene ID: HRGMv2_4434_28_14
Type: CAZyme
Location: 17555 - 18406 (-)
Type: CAZyme
Location: 17555 - 18406 (-)
Gene ID: HRGMv2_4434_28_15
Type: CAZyme
Location: 18396 - 19637 (-)
Type: CAZyme
Location: 18396 - 19637 (-)
Gene ID: HRGMv2_4434_28_16
Type: pfam
Location: 20117 - 20986 (-)
Type: pfam
Location: 20117 - 20986 (-)
Gene ID: HRGMv2_4434_28_17
Type: TC
Location: 21528 - 22730 (-)
Type: TC
Location: 21528 - 22730 (-)
Gene ID: HRGMv2_4434_28_18
Type: pfam
Location: 23304 - 24056 (+)
Type: pfam
Location: 23304 - 24056 (+)
Gene ID: HRGMv2_4434_28_19
Type: pfam
Location: 24178 - 24900 (+)
Type: pfam
Location: 24178 - 24900 (+)
Gene ID: HRGMv2_4434_28_20
Type: TC
Location: 25110 - 26873 (+)
Type: TC
Location: 25110 - 26873 (+)
Gene ID: HRGMv2_4434_28_21
Type: TC
Location: 26873 - 27910 (+)
Type: TC
Location: 26873 - 27910 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.