Cluster: HRGMv2_4423_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4423
- CGC Family ID: CGCFAM_00142
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4423_7 | HRGMv2_4423_7_4 | 2741 | 3694 | - | GH179 |
| pfam | HRGMv2_4423_7 | HRGMv2_4423_7_5 | 3697 | 4554 | - | AP_endonuc_2 |
| TF | HRGMv2_4423_7 | HRGMv2_4423_7_6 | 4672 | 5496 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4423_7 | HRGMv2_4423_7_7 | 5749 | 7305 | - | 2.A.25.1.9 |
| NULL(UNKNOWN) | HRGMv2_4423_7 | HRGMv2_4423_7_8 | 7654 | 8541 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_4423_7 | HRGMv2_4423_7_9 | 8563 | 9447 | - | PfkB |
| TC | HRGMv2_4423_7 | HRGMv2_4423_7_10 | 9638 | 10930 | + | 2.A.37.3.3 |
Gene ID: HRGMv2_4423_7_4
Type: CAZyme
Location: 2741 - 3694 (-)
Type: CAZyme
Location: 2741 - 3694 (-)
Gene ID: HRGMv2_4423_7_5
Type: pfam
Location: 3697 - 4554 (-)
Type: pfam
Location: 3697 - 4554 (-)
Gene ID: HRGMv2_4423_7_6
Type: TF
Location: 4672 - 5496 (+)
Type: TF
Location: 4672 - 5496 (+)
Gene ID: HRGMv2_4423_7_7
Type: TC
Location: 5749 - 7305 (-)
Type: TC
Location: 5749 - 7305 (-)
Gene ID: HRGMv2_4423_7_8
Type:
Location: 7654 - 8541 (-)
Type:
Location: 7654 - 8541 (-)
Gene ID: HRGMv2_4423_7_9
Type: STP
Location: 8563 - 9447 (-)
Type: STP
Location: 8563 - 9447 (-)
Gene ID: HRGMv2_4423_7_10
Type: TC
Location: 9638 - 10930 (+)
Type: TC
Location: 9638 - 10930 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
SFWF01
Species
SFWF01 sp949293385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.