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Cluster: HRGMv2_4421_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4421_6 HRGMv2_4421_6_84 84060 84878 - 8.A.21.2.3
TF HRGMv2_4421_6 HRGMv2_4421_6_85 84932 85588 - 0042546
TC HRGMv2_4421_6 HRGMv2_4421_6_86 85775 86542 + 3.A.1.17.8
TC HRGMv2_4421_6 HRGMv2_4421_6_87 86532 87356 + 3.A.1.17.13
pfam HRGMv2_4421_6 HRGMv2_4421_6_88 87393 88415 + NMT1 | NMT1_2
CAZyme HRGMv2_4421_6 HRGMv2_4421_6_89 88526 89410 - GH16_3
NULL(UNKNOWN) HRGMv2_4421_6 HRGMv2_4421_6_90 89496 90242 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4421_6 HRGMv2_4421_6_91 90239 90991 - 3.A.1.3.14
TC HRGMv2_4421_6 HRGMv2_4421_6_92 91004 91660 - 3.A.1.3.14
STP HRGMv2_4421_6 HRGMv2_4421_6_93 91761 92567 - SBP_bac_3
TC HRGMv2_4421_6 HRGMv2_4421_6_94 93030 94160 + 3.B.1.1.5
NULL(UNKNOWN) HRGMv2_4421_6 HRGMv2_4421_6_95 94189 94317 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4421_6 HRGMv2_4421_6_96 94355 94996 + 9.B.20.1.4
Gene ID: HRGMv2_4421_6_84
Type: TC
Location: 84060 - 84878 (-)
Gene ID: HRGMv2_4421_6_85
Type: TF
Location: 84932 - 85588 (-)
Gene ID: HRGMv2_4421_6_86
Type: TC
Location: 85775 - 86542 (+)
Gene ID: HRGMv2_4421_6_87
Type: TC
Location: 86532 - 87356 (+)
Gene ID: HRGMv2_4421_6_88
Type: pfam
Location: 87393 - 88415 (+)
Gene ID: HRGMv2_4421_6_89
Type: CAZyme
Location: 88526 - 89410 (-)
Gene ID: HRGMv2_4421_6_90
Type:
Location: 89496 - 90242 (-)
Gene ID: HRGMv2_4421_6_91
Type: TC
Location: 90239 - 90991 (-)
Gene ID: HRGMv2_4421_6_92
Type: TC
Location: 91004 - 91660 (-)
Gene ID: HRGMv2_4421_6_93
Type: STP
Location: 91761 - 92567 (-)
Gene ID: HRGMv2_4421_6_94
Type: TC
Location: 93030 - 94160 (+)
Gene ID: HRGMv2_4421_6_95
Type:
Location: 94189 - 94317 (+)
Gene ID: HRGMv2_4421_6_96
Type: TC
Location: 94355 - 94996 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4421_6_93 vegetarian > vegan 1.81448 0.00108

🧭 Explore Read Mapping of CGC

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