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Cluster: HRGMv2_4412_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4412_10 HRGMv2_4412_10_10 12928 14577 + 3.A.1.1.10
pfam HRGMv2_4412_10 HRGMv2_4412_10_11 14666 14866 - LysR_substrate
TF HRGMv2_4412_10 HRGMv2_4412_10_12 14988 15530 - HTH_1
TC HRGMv2_4412_10 HRGMv2_4412_10_13 15679 17316 + 3.B.1.1.4
TC HRGMv2_4412_10 HRGMv2_4412_10_14 17335 17643 + 3.B.1.1.4
TC HRGMv2_4412_10 HRGMv2_4412_10_15 17640 19286 + 3.B.1.1.4
pfam HRGMv2_4412_10 HRGMv2_4412_10_16 19371 20393 + CitG
CAZyme HRGMv2_4412_10 HRGMv2_4412_10_17 21232 24078 + GH3
Gene ID: HRGMv2_4412_10_10
Type: TC
Location: 12928 - 14577 (+)
Gene ID: HRGMv2_4412_10_11
Type: pfam
Location: 14666 - 14866 (-)
Gene ID: HRGMv2_4412_10_12
Type: TF
Location: 14988 - 15530 (-)
Gene ID: HRGMv2_4412_10_13
Type: TC
Location: 15679 - 17316 (+)
Gene ID: HRGMv2_4412_10_14
Type: TC
Location: 17335 - 17643 (+)
Gene ID: HRGMv2_4412_10_15
Type: TC
Location: 17640 - 19286 (+)
Gene ID: HRGMv2_4412_10_16
Type: pfam
Location: 19371 - 20393 (+)
Gene ID: HRGMv2_4412_10_17
Type: CAZyme
Location: 21232 - 24078 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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