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Cluster: HRGMv2_4412_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4412_5 HRGMv2_4412_5_25 25532 27079 + 3.A.1.120.3
peptidase HRGMv2_4412_5 HRGMv2_4412_5_26 27095 27721 + S09.UPW
pfam HRGMv2_4412_5 HRGMv2_4412_5_27 27800 27994 - SASP
TC HRGMv2_4412_5 HRGMv2_4412_5_28 28330 29262 - 2.A.4.7.9
pfam HRGMv2_4412_5 HRGMv2_4412_5_29 29685 32363 - Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_3
TC HRGMv2_4412_5 HRGMv2_4412_5_30 32856 33860 + 3.A.1.14.10
TC HRGMv2_4412_5 HRGMv2_4412_5_31 33871 34665 + 3.A.1.14.8
STP HRGMv2_4412_5 HRGMv2_4412_5_32 34715 35842 + Peripla_BP_2
TF HRGMv2_4412_5 HRGMv2_4412_5_33 35950 36255 - HTH_3
CAZyme HRGMv2_4412_5 HRGMv2_4412_5_34 36537 39140 + CBM67 | GH78
pfam HRGMv2_4412_5 HRGMv2_4412_5_35 39223 39750 - AAA_18
TC HRGMv2_4412_5 HRGMv2_4412_5_36 39977 41353 - 2.A.66.1.32
Gene ID: HRGMv2_4412_5_25
Type: TC
Location: 25532 - 27079 (+)
Gene ID: HRGMv2_4412_5_26
Type: peptidase
Location: 27095 - 27721 (+)
Gene ID: HRGMv2_4412_5_27
Type: pfam
Location: 27800 - 27994 (-)
Gene ID: HRGMv2_4412_5_28
Type: TC
Location: 28330 - 29262 (-)
Gene ID: HRGMv2_4412_5_29
Type: pfam
Location: 29685 - 32363 (-)
Gene ID: HRGMv2_4412_5_30
Type: TC
Location: 32856 - 33860 (+)
Gene ID: HRGMv2_4412_5_31
Type: TC
Location: 33871 - 34665 (+)
Gene ID: HRGMv2_4412_5_32
Type: STP
Location: 34715 - 35842 (+)
Gene ID: HRGMv2_4412_5_33
Type: TF
Location: 35950 - 36255 (-)
Gene ID: HRGMv2_4412_5_34
Type: CAZyme
Location: 36537 - 39140 (+)
Gene ID: HRGMv2_4412_5_35
Type: pfam
Location: 39223 - 39750 (-)
Gene ID: HRGMv2_4412_5_36
Type: TC
Location: 39977 - 41353 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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