Cluster: HRGMv2_4412_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4412
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4412_3 | HRGMv2_4412_3_29 | 28971 | 30770 | - | 9.B.33.1.1 |
| TC | HRGMv2_4412_3 | HRGMv2_4412_3_30 | 30984 | 31946 | + | 3.A.1.1.10 |
| TC | HRGMv2_4412_3 | HRGMv2_4412_3_31 | 31970 | 32857 | + | 3.A.1.1.10 |
| NULL(UNKNOWN) | HRGMv2_4412_3 | HRGMv2_4412_3_32 | 32924 | 34642 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_4412_3 | HRGMv2_4412_3_33 | 34735 | 37050 | + | S09.UPW |
| CAZyme | HRGMv2_4412_3 | HRGMv2_4412_3_34 | 37126 | 39516 | - | GT35 |
| CAZyme | HRGMv2_4412_3 | HRGMv2_4412_3_35 | 39770 | 41191 | - | GT5 |
| pfam | HRGMv2_4412_3 | HRGMv2_4412_3_36 | 41260 | 42378 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4412_3 | HRGMv2_4412_3_37 | 42422 | 43630 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_4412_3 | HRGMv2_4412_3_38 | 43800 | 45926 | - | GH13_9 |
| CAZyme | HRGMv2_4412_3 | HRGMv2_4412_3_39 | 46514 | 48418 | + | GH13_39 |
| TC | HRGMv2_4412_3 | HRGMv2_4412_3_40 | 48602 | 49735 | + | 9.B.10.1.1 |
Gene ID: HRGMv2_4412_3_29
Type: TC
Location: 28971 - 30770 (-)
Type: TC
Location: 28971 - 30770 (-)
Gene ID: HRGMv2_4412_3_30
Type: TC
Location: 30984 - 31946 (+)
Type: TC
Location: 30984 - 31946 (+)
Gene ID: HRGMv2_4412_3_31
Type: TC
Location: 31970 - 32857 (+)
Type: TC
Location: 31970 - 32857 (+)
Gene ID: HRGMv2_4412_3_32
Type:
Location: 32924 - 34642 (+)
Type:
Location: 32924 - 34642 (+)
Gene ID: HRGMv2_4412_3_33
Type: peptidase
Location: 34735 - 37050 (+)
Type: peptidase
Location: 34735 - 37050 (+)
Gene ID: HRGMv2_4412_3_34
Type: CAZyme
Location: 37126 - 39516 (-)
Type: CAZyme
Location: 37126 - 39516 (-)
Gene ID: HRGMv2_4412_3_35
Type: CAZyme
Location: 39770 - 41191 (-)
Type: CAZyme
Location: 39770 - 41191 (-)
Gene ID: HRGMv2_4412_3_36
Type: pfam
Location: 41260 - 42378 (-)
Type: pfam
Location: 41260 - 42378 (-)
Gene ID: HRGMv2_4412_3_37
Type: pfam
Location: 42422 - 43630 (-)
Type: pfam
Location: 42422 - 43630 (-)
Gene ID: HRGMv2_4412_3_38
Type: CAZyme
Location: 43800 - 45926 (-)
Type: CAZyme
Location: 43800 - 45926 (-)
Gene ID: HRGMv2_4412_3_39
Type: CAZyme
Location: 46514 - 48418 (+)
Type: CAZyme
Location: 46514 - 48418 (+)
Gene ID: HRGMv2_4412_3_40
Type: TC
Location: 48602 - 49735 (+)
Type: TC
Location: 48602 - 49735 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecivivens
Species
Faecivivens sp944387995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.